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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Will Wilder | 37th | Will Wilder | 48th | 41st |
| First Basemen | Todd Acosta | 63rd | Michael McOwen | Tied for 67th | 69th |
| Second Basemen | Félix Cuellar | 18th | Héctor Polanco | 24th | 16th |
| Third Basemen | Shigenobu Wada | 43rd | Shigenobu Wada | 10th | Tied for 35th |
| Shortstops | Cody Bradford | Tied for 13th | Cody Bradford | Tied for 37th | Tied for 21st |
| Left Fielders | Narihira Ishikawa | 5th | Warren Downing | 62nd | 6th |
| Center Fielders | Dave Gordon | 50th | Samuel Gaunt | 19th | 41st |
| Right Fielders | Roberto Núñez | 36th | Breck Warner | 35th | 33rd |
| Starting Pitchers | Dave McKinley | 35th | Dave McKinley | 41st | 39th |
| Relievers | Alex Evans | 27th | Alex Evans | 21st | 27th |
| Closers | Mark Miller | Tied for 28th | Mark Miller | 39th | 34th |
